The JASMIN Analysis Platform

This page provides details of the old method of providing software environments on JASMIN, known as the "JASMIN Analysis Platform", or JAP. The JAP provides a Python 2 environment but is being superseded by the "Jaspy" approach, which builds on Conda to provide multiple software environment based on Python 3. See more information about Jaspy and Python 3.

See also: JASMIN software changes: migration to CentOS7 (2020)

What is the JASMIN Analysis Platform?

The  JASMIN Analysis Platform (JAP) is a Linux-based system containing many of the tools used by Atmospheric and Earth Observation scientists use to analyse data. CEDA maintains a set of RPMs compatible with Red hat Enterprise Linux 6 and CentOS 6.4 which radically reduces the overhead in installing these analysis tools. The JASMIN Analysis Platform is installed on all shared analysis VMs within the JASMIN infrastructure and can be installed on dedicated VM on request. 

NOTE: The JAP will be superseded by "Jaspy". See more details about Jaspy and Python 3 environments.

NOTE: If you are using Matplotlib to visualise data please refer to the advice on our Matplotlib help page.

Requesting updates to packages within the JAP

You can request additional or updated software via one of the following mechanisms:

  • Create a new issue at JAP Issues on GitHub (see button top right).  You will need to register for a GitHub account (for free).  To receive email updates, you can choose to "subscribe" to the ticket (and/or tickets created by other people).  Please note that all tickets are public.
  • If you do not wish to create a GitHub account, or you wish to supply extra non-public information, then you can contact the CEDA helpdesk, and we will create a GitHub ticket on your behalf and let you know its URL.  Please be aware that you may still need to check the ticket for any further updates.

Once you have created a ticket, we will endeavour to provide the software if possible and appropriate, but there is likely to be a delay until our next release of the JASMIN Analysis Platform.  We do not normally install individual packages on the operational servers outside of the advertised JAP updates (so as to keep the software environment as predictable as possible for users), but there are sometimes routes for you to start using the package before we install them on these systems:

  • If your request is for a Python package, please see our instructions on how to build the package in a virtual environment in your personal file space.
  • In some situations, we will be happy to install the package for you on the test machine , hopefully soon after the your request and maybe some time before it is included in the JASMIN Analysis Platform.  Users can log into this machine, but it has less memory than the operational servers, so please only use it to run software which we install for you on this basis.

    Although we will decide on a case-by-case basis whether or not to install a package on jasmin-sci1-test ahead of a JAP update, usually we would be happy to do so if it is available from standard RPM repositories (particularly if it is a new package rather than an upgrade), but not if we need to build it ourselves.   The RPMs for the Python packages are built by CEDA, so for these, please refer to the previous option about virtual environments.

    Please note that the software environment on jasmin-sci1-test may change without notice, because we use the machine for pre-release JAP testing, and because we may also do ad-hoc software installation for other users on a similar basis.

List of packages

Here are the packages included in the JAP:

Package Version Release Build date Summary
arpack 3.1.3 1.el6 2013-09-05 Fortran 77 subroutines for solving large scale eigenvalue problems
atlas 3.8.4 2.el6 2012-02-09 Automatically Tuned Linear Algebra Software
atlas-devel 3.8.4 2.el6 2012-02-09 Development libraries for ATLAS
bbcp 140414.00.1 1.ceda 2014-09-10 A multi-streaming network transfer utility
bbcp-config 1 1.ceda 2014-09-10 configures bbcp to use IPv4 by default
blas 3.2.1 5.el6 2016-10-05 The Basic Linear Algebra Subprograms library
boost-devel 1.41.0 28.el6 2015-12-23 The Boost C++ headers and shared development libraries
cdo 1.9.5 2.ceda.el6 2018-08-23 Climate Data Operators is a set of operators for working on climate and NWP model data.
cmip6-cmor-tables 6.1.23 1.ceda.el6 2018-03-31 CMIP6 tables for CMOR
cmor-libs 3.3.2 1.ceda.el6 2018-03-31 Development libraries for CMOR
coda 0.18.1 1.ceda.el6 2016-10-16 Output Analysis and Diagnostics for MCMC
ddd 3.3.12 6.el6 2014-01-30 GUI for several command-line debuggers
diffuse 0.4.3 1.el6 2010-08-11 Graphical tool for comparing and merging text files
dvipng 1.11 3.2.el6 2010-04-27 Converts DVI files to PNG/GIF format
eccodes 2.4.1 1.ceda.el6 2017-09-25 API and tools for encoding/decoding WMO GRIB, BUFR and GTS
eccodes-devel 2.4.1 1.ceda.el6 2017-09-25 Development package for eccodes
eccodes-fortran 2.4.1 1.ceda.el6 2017-09-25 Fortran bindings for eccodes
eccodes-python27 2.4.1 1.ceda.el6 2017-09-25 python27 bindings for eccodes
emacs 23.1 28.el6 2014-11-27 GNU Emacs text editor
emacs-common-ess 15.03.1 1.ceda.el6 2016-03-06 Emacs Speaks Statistics add-on package for Emacs
emacs-ess 15.03.1 1.ceda.el6 2016-03-06 Compiled elisp files to run Emacs Speaks Statistics under GNU Emacs
emacs-ess-el 15.03.1 1.ceda.el6 2016-03-06 Elisp source files for Emacs Speaks Statistics under GNU Emacs
emacs-gnuplot 4.2.6 2.el6 2010-02-22 Emacs bindings for the gnuplot main application
emos 000382 1.ceda.el6 2013-01-03 EMOSLIB interpolation software from ECMWF
esmf 7.0.0b57 1.ceda.el6 2016-04-07 Software for building and coupling weather, climate, and related models
esmf-doc 7.0.0b57 1.ceda.el6 2016-04-07 HTML documentation for ESMF
esmf-python27 7.0.0b57 1.ceda.el6 2016-04-07 Python 2.7 bindings for ESMF
ferret 6.93 1.ceda.el6 2015-01-27 An Analysis Tool for Gridded and Non-Gridded Data
fftw 3.2.1 3.1.el6 2009-12-05 Fast Fourier Transform library
fftw-devel 3.2.1 3.1.el6 2009-12-05 Headers, libraries and docs for the FFTW library
firefox 60.1.0 6.el6 2018-07-10 Mozilla Firefox Web browser
flex-devel 2.5.35 9.el6 2014-02-25 Libraries for flex scanner generator
gcc-gfortran 4.4.7 23.el6 2018-04-12 Fortran support
gdal 2.1.1 2.ceda.el6 2017-09-25 GIS file format library
gdal-devel 2.1.1 2.ceda.el6 2017-09-25 Development files for the GDAL file format library
gdal-doc 2.1.1 2.ceda.el6 2017-09-25 Documentation for GDAL
gdal-java 2.1.1 2.ceda.el6 2017-09-25 Java modules for the GDAL file format library
gdal-javadoc 2.1.1 2.ceda.el6 2017-09-25 Javadocs for gdal
gdal-libs 2.1.1 2.ceda.el6 2017-09-25 GDAL file format library
gdal-perl 2.1.1 2.ceda.el6 2017-09-25 Perl modules for the GDAL file format library
gdal-python27 2.1.1 2.ceda.el6 2017-09-25 Python 2.7 modules for the GDAL file format library
geany 1.24.1 1.el6 2014-04-28 A fast and lightweight IDE using GTK2
geos 3.5.0 2.ceda.el6 2016-04-07 Geometry Engine, Open Source
geos-devel 3.5.0 2.ceda.el6 2016-04-07 Development libraries for GEOS
git 1.7.1 9.el6_9 2017-08-11 Fast Version Control System
gitk 1.7.1 9.el6_9 2017-08-11 Git revision tree visualiser
glibc-static 2.12 1.212.el6 2017-12-15 C library static libraries for -static linking.
gnuplot 4.2.6 2.el6 2010-02-22 A program for plotting mathematical expressions and data
gpsbabel 1.4.4 1.ceda.el6 2013-04-26 A tool to convert between various formats used by GPS devices
grads 2.1.1.b0 1.ceda.el6 2018-04-02 Grid Analysis and Display System
GraphicsMagick-c++ 1.3.20 3.el6 2014-08-28 GraphicsMagick Magick++ library (C++ bindings)
graphviz 2.36.0 1.ceda.el6 2014-02-20 Graph Visualization Tools
graphviz-python27 2.36.0 1.ceda.el6 2014-02-20 Python 2.7 extension for graphviz
grass 6.4.4 3.ceda.el6 2016-04-07 GRASS - Geographic Resources Analysis Support System
grass-devel 6.4.4 3.ceda.el6 2016-04-07 GRASS (Geographic Resources Analysis Support System) development headers
grass-libs 6.4.4 3.ceda.el6 2016-04-07 GRASS (Geographic Resources Analysis Support System) runtime libraries
grib_api 1.23.0 1.ceda.el6 2017-07-04 The ECMWF GRIB API is an application program interface accessible from C and FORTRAN programs developed for encoding and decoding WMO FM-92 GRIB edition 1 and edition 2 messages.
grib_api-devel 1.23.0 1.ceda.el6 2017-07-04 Development files for grib_api
grib_api-fortran 1.23.0 1.ceda.el6 2017-07-04 Fortran 90 interface for grib_api
grib_api-python27 1.23.0 1.ceda.el6 2017-07-04 Python interface for grib_api
gsl-devel 1.13 1.el6 2009-11-19 Libraries and the header files for GSL development
gsl-static 1.13 1.el6 2009-11-19 Static libraries of the GSL package
gtk2-devel 2.24.23 9.el6 2016-10-10 Development files for GTK+
gv 3.7.1 1.el6 2010-12-10 A X front-end for the Ghostscript PostScript(TM) interpreter
hdf 4.2.9 1.ceda.el6 2013-04-26 A general purpose library and file format for storing scientific data
hdf-devel 4.2.9 1.ceda.el6 2013-04-26 HDF development files
hdf5 1.10.1 1.ceda.el6 2017-09-25 HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.
hdf5-devel 1.10.1 1.ceda.el6 2017-09-25 Development libraries for HDF5.
hdfeos2 19.1.00 1.ceda.el6 2015-07-13 HDF-EOS2 libraries
hdfeos5 1.15 1.ceda.el6 2016-04-07 HDF-EOS5 libraries
ImageMagick 6.el6 2017-01-12 An X application for displaying and manipulating images
JAGS 4.2.0 1.ceda.el6 2016-10-16 Just Another Gibbs Sampler
jasmin-common-vm 1.35 2.ceda 2018-08-24 Adds common configuration for JASMIN science VM and for Lotus VM
jasmin-sci-vm 1.35 2.ceda 2018-08-24 Adds configuration for JASMIN science VM
jasper-devel 1.900.1 22.el6 2017-12-07 Header files, libraries and developer documentation
ksh 20120801 37.el6_9 2018-01-22 The Original ATT Korn Shell
lapack 3.2.1 5.el6 2016-10-05 Numerical linear algebra package libraries
lapack-devel 3.2.1 5.el6 2016-10-05 LAPACK development libraries
leafpad 1.el6 2011-05-20 GTK+ based simple text editor
libcdms 6.0rc2 7.ceda.el6 2017-09-25 libcdms library from CDAT
libcrayutil 20121128 2.ceda.el6 2013-01-02 a Cray-compatibility utility library for building UM-related utilities
libcurl-devel 7.19.7 53.el6_9 2017-03-07 Files needed for building applications with libcurl
libdrs 20130102 3.ceda.el6 2016-04-07 Data Retrieval and Storage System library
libRmath 2.10.0 2.el6 2012-10-18 Standalone math library from the R project
libRmath-devel 2.10.0 2.el6 2012-10-18 Standalone math library from the R project
libuuid 2.17.2 12.28.el6_9.2 2017-12-05 Universally unique ID library
libuuid-devel 2.17.2 12.28.el6_9.2 2017-12-05 Universally unique ID library
llvm-devel 3.4.2 4.el6 2015-01-03 Libraries and header files for LLVM
lxterminal 0.1.9 1.ceda.el6 2014-11-22 Desktop-independent VTE-based terminal emulator
mercurial 1.4 5.el6_9 2017-06-16 A fast, lightweight distributed source control management system
mo_unpack 3.1.2 1.ceda.el6 2016-09-18 A library for handling the WGDOS and RLE compression schemes used in UM files.
mpich 3.1 5.el6 2016-01-18 A high-performance implementation of MPI
mtk 1.4.3 1.ceda.el6 2015-01-27 MISR Toolkit
mtk-devel 1.4.3 1.ceda.el6 2015-01-27 Development libraries for Mtk.
mtk-python27 1.4.3 1.ceda.el6 2015-01-27 Python bindings for Mtk.
ncBrowse 1.6.5 2.ceda.el6 2013-01-24 a graphical netCDF file browser
nccmp 1.ceda.el6 2017-09-29 nccmp compares two NetCDF files bitwise.
ncl 6.4.0 1.ceda.el6 2017-07-07 NCAR Command Language
nco 4.7.3 1.ceda.el6 2018-03-31 The netCDF Operators (NCO) perform a range of operations using netCDF files as input
nco-devel 4.7.3 1.ceda.el6 2018-03-31 Development libraries for NCO
ncview 2.1.7 1.ceda.el6 2016-04-07 a netCDF visual browser
nedit 5.7 1.el6 2017-03-14 A GUI text editor for systems with X
netcdf 4.4.1 1.ceda.el6 2017-09-25 NetCDF is a set of libraries and related data formats for array-oriented scientific data.
netcdf-c++ 4.2 6.ceda.el6 2017-10-05 C++ bindings for netCDF
netcdf-c++-devel 4.2 6.ceda.el6 2017-10-05 C++ development libraries for netCDF.
netcdf-devel 4.4.1 1.ceda.el6 2017-09-25 Development libraries for netCDF.
netcdf-fortran 4.4.3 3.ceda.el6 2017-10-05 Fortran bindings for netCDF
netcdf-fortran-devel 4.4.3 3.ceda.el6 2017-10-05 Fortran development libraries for netCDF.
octave 4.0.0 3.ceda.el6 2017-09-26 A high-level language for numerical computations
octave-devel 4.0.0 3.ceda.el6 2017-09-26 Development headers and files for Octave
octave-doc 4.0.0 3.ceda.el6 2017-09-26 Documentation for Octave
octave-netcdf 1.0.7 2.ceda.el6 2016-04-07 A MATLAB compatible NetCDF interface for Octave
octave-octcdf 1.1.8 3.ceda.el6 2016-04-07 A NetCDF interface for octave
p7zip 16.02 10.el6 2018-02-06 Very high compression ratio file archiver
parallel 20160822 1.ceda.el6 2016-09-18 A shell tool for executing jobs in parallel using one or more computers
pdftk 2.02 1.el6 2014-01-20 PDFtk, The PDF Toolkit
perl-core 5.10.1 144.el6 2016-11-03 Base perl metapackage
perl-devel 5.10.1 144.el6 2016-11-03 Header files for use in perl development
perl-Image-ExifTool 9.98 1.ceda.el6 2015-07-13 Image-ExifTool - Read and write meta information
perl-XML-Parser 2.36 7.el6 2010-04-19 Perl module for parsing XML files
postgresql-devel 8.4.20 8.el6_9 2017-09-01 PostgreSQL development header files and libraries
proj 4.9.0 1.ceda.el6 2016-09-18 Cartographic projection software (PROJ.4)
proj-devel 4.9.0 1.ceda.el6 2016-09-18 Development files for PROJ.4
proj-epsg 4.9.0 1.ceda.el6 2016-09-18 EPSG dataset for PROJ.4
proj-nad 4.9.0 1.ceda.el6 2016-09-18 US and Canadian datum shift grids for PROJ.4
proj-static 4.9.0 1.ceda.el6 2016-09-18 Development files for PROJ.4
python27 2.7.3 3.ceda.el6 2014-02-21 An interpreted, interactive, object-oriented programming language
python27-astral 1.4 1.ceda.el6 2017-07-04 Calculations for the position of the sun and moon.
python27-backports-common 1.1 1.ceda.el6 2018-07-18 Common files for backports packages
python27-backports-functools_lru_cache 1.5 1.ceda.el6 2018-07-18 backports.functools_lru_cache
python27-backports-ssl_match_hostname 3.ceda.el6 2018-07-18 The ssl.match_hostname() function from Python 3.4
python27-basemap 1.1.0 1.ceda.el6 2018-08-23 Plot data on map projections with matplotlib
python27-biggus 0.15.0 1.ceda.el6 2017-07-05 Virtual large arrays and lazy evaluation
python27-boto3 1.6.21 1.ceda.el6 2018-03-31 The AWS SDK for Python
python27-botocore 1.9.21 1.ceda.el6 2018-03-31 Low-level, data-driven core of boto 3.
python27-cartopy 0.15.1 1.ceda.el6 2017-07-05 a cartographic python library with matplotlib support
python27-ccplot 1.5.2 1.ceda.el6 2018-07-16 CloudSat and CALIPSO plotting tool
python27-cdat_lite 6.0rc2 7.ceda.el6 2017-09-25 Core components of the Climate Data Analysis tools. This software is based on CDAT-6.0.alpha-ge3b1a45 and cdunfpp0.13.
python27-cerbere 0.1.619 1.ceda.el6 2018-03-30 The Ifremer/Cersat library for reading and normalizing EO data.
python27-certifi 2017.4.17 1.ceda.el6 2017-07-04 Python package for providing Mozilla's CA Bundle.
python27-cf 2.2.4 1.ceda.el6 2018-07-16 Python interface to the CF data model
python27-cf-checker 3.0.5 1.ceda.el6 2017-07-05 The NetCDF Climate Forcast Conventions compliance checker
python27-cf-plot 2.1.75 1.ceda.el6 2018-07-16 Climate plots in Python
python27-cf-units 2.0.2 1.ceda.el6 2018-07-16 Python interface to Unidata/UCAR UDUNITS-2 and netcdftime
python27-cf-view 1.0.4 1.ceda.el6 2017-07-05 Graohical User Interface to cf-python and cf-plot
python27-cf_units 1.1.3 2.ceda.el6 2017-07-06 Python interface to Unidata/UCAR UDUNITS-2 and netcdftime
python27-cftime 1.0.0 1.ceda.el6 2018-07-16 Time-handling functionality from netcdf4-python
python27-chardet 3.0.4 1.ceda.el6 2017-07-04 Universal encoding detector for Python 2 and 3
python27-cis 1.5.4 1.ceda.el6 2017-07-04 Community Intercomparison Suite
python27-cloudpickle 0.2.1 1.ceda.el6 2018-04-02 Extended pickling support for Python objects
python27-cmor 3.3.2 1.ceda.el6 2018-03-31 a library to produce CMOR-compliant netCDF files (for Python 2.7)
python27-cycler 0.10.0 1.ceda.el6 2016-09-18 Composable style cycles
python27-Cython 0.28.1 1.ceda.el6 2018-03-31 The Cython compiler for writing C extensions for the Python language.
python27-dask 0.17.2 1.ceda.el6 2018-04-02 Parallel PyData with Task Scheduling
python27-dateutil 2.4.2 1.ceda.el6 2015-08-23 Extensions to the standard Python datetime module
python27-descartes 1.1.0 1.ceda.el6 2018-03-31 Use geometric objects as matplotlib paths and patches
python27-ecmwf-api-client 1.4.2 1.ceda.el6 2018-07-16 Python client for ECMWF web services API.
python27-emcee 2.2.1 1.ceda.el6 2018-03-30 Kick ass affine-invariant ensemble MCMC sampling
python27-enum34 1.0.4 1.ceda.el6 2018-03-31 Python 3.4 Enum backported to 3.3, 3.2, 3.1, 2.7, 2.6, 2.5, and 2.4
python27-eofs 1.2.0 1.ceda.el6 2016-12-11 EOF analysis in Python
python27-esgf-pyclient 0.1.8 1.ceda.el6 2017-07-04 A library interacting with ESGF services within Python
python27-filelock 3.0.4 1.ceda.el6 2018-04-02 A platform independent file lock.
python27-Fiona 1.7.11.post1 1.ceda.el6 2018-03-31 Fiona reads and writes spatial data files
python27-geopandas 0.3.0 1.ceda.el6 2018-03-31 Geographic pandas extensions
python27-h5py 2.7.1 1.ceda.el6 2017-09-25 Read and write HDF5 files from Python
python27-httplib2 0.10.3 1.ceda.el6 2017-07-06 A comprehensive HTTP client library.
python27-idna 2.5 1.ceda.el6 2017-07-04 Internationalized Domain Names in Applications (IDNA)
python27-ilamb 2.3 1.ceda.el6 2018-07-16 The International Land Model Benchmarking Package
python27-ImageHash 4.0 1.ceda.el6 2018-07-18 Image Hashing library
python27-ipython 2.0.0 1.ceda 2014-04-28 IPython: Productive Interactive Computing
python27-iris 2.0.0 1.ceda.el6 2018-04-02 A powerful, easy to use, and community-driven Python library for analysing and visualising meteorological and oceanographic data sets
python27-iris-grib 0.13.0 1.ceda.el6 2018-07-16 GRIB loading for Iris
python27-iris_sample_data 2.0.0 1.ceda.el6 2016-12-11 Iris sample data
python27-jinja2 2.7.2 1.ceda.el6 2014-02-13 A small but fast and easy to use stand-alone template engine written in pure python.
python27-jmespath 0.9.3 1.ceda.el6 2018-03-31 JSON Matching Expressions
python27-joblib 0.11 1.ceda.el6 2018-04-02 Lightweight pipelining: using Python functions as pipeline jobs.
python27-Jug 0.9.6 1.ceda.el6 2014-02-05 A Task Based Parallelization Framework
python27-kiwisolver 1.0.1 1.ceda.el6 2018-07-18 A fast implementation of the Cassowary constraint solver
python27-latexcodec 1.0.5 1.ceda.el6 2018-03-31 A lexer and codec to work with LaTeX code in Python.
python27-locket 0.2.0 1.ceda.el6 2018-04-02 File-based locks for Python for Linux and Windows
python27-MarkupSafe 0.18 1.ceda.el6 2014-02-13 Implements a XML/HTML/XHTML Markup safe string for Python
python27-matplotlib 2.2.2 3.ceda.el6 2018-08-16 Python plotting package
python27-mo_pack 0.2.0 1.ceda.el6 2016-09-18 Python wrapper to libmo_unpack
python27-mock 1.0.1 1.ceda.el6 2014-02-20 A Python Mocking and Patching Library for Testing
python27-mpi4py-mpich 1.3.1 1.ceda 2018-07-16 MPI for Python
python27-mpmath 1.0.0 1.ceda.el6 2018-07-16 Python library for arbitrary-precision floating-point arithmetic
python27-nappy 1.1.2 2.ceda.el6 2016-04-07 NASA Ames Processing in Python
python27-nc-time-axis 1.0.0 1.ceda.el6 2016-12-11 netcdftime support for matplotlib axis
python27-netCDF4 1.2.9 1.ceda.el6 2017-07-04 Provides an object-oriented python interface to the netCDF version 4 library.
python27-nose 1.3.7 1.ceda.el6 2017-07-05 nose extends unittest to make testing easier
python27-numpy 1.14.5 1.ceda.el6 2018-07-18 NumPy: array processing for numbers, strings, records, and objects.
python27-packaging 17.1 1.ceda.el6 2018-07-18 Core utilities for Python packages
python27-pandas 0.19.1 1.ceda.el6 2016-12-11 Powerful data structures for data analysis, time series,and statistics
python27-partd 0.3.8 1.ceda.el6 2018-04-02 Appendable key-value storage
python27-patsy 0.5.0 1.ceda.el6 2018-04-02 A Python package for describing statistical models and for building design matrices.
python27-pep8 1.7.1 1.ceda.el6 2018-04-02 Python style guide checker
python27-PIL 1.1.7 2.ceda.el6 2014-04-28 Python Imaging Library
python27-Pillow 5.2.0 1.ceda.el6 2018-08-16 Python Imaging Library (Fork)
python27-psutil 3.1.1 1.ceda.el6 2015-08-24 psutil is a cross-platform library for retrieving information onrunning processes and system utilization (CPU, memory, disks, network)in Python.
python27-psycopg2 2.6.2 1.ceda.el6 2016-11-01 psycopg2 - Python-PostgreSQL Database Adapter
python27-pybtex 0.21 1.ceda.el6 2018-03-31 A BibTeX-compatible bibliography processor in Python
python27-pycairo 1.8.6 1.ceda.el6 2014-06-27 Python bindings for the cairo library
python27-pycodestyle 2.3.1 1.ceda.el6 2018-04-02 Python style guide checker
python27-Pydap 3.2.2 1.ceda.el6 2017-07-06 Pure Python Opendap/DODS client and server.
python27-pygeode 1.0.4a 1.ceda.el6 2015-11-07 Gridded data manipulator for Python
python27-Pygments 2.2.0 2.ceda.el6 2018-03-07 Pygments is a syntax highlighting package written in Python.
python27-pygobject2 2.20.0 1.ceda.el6 2014-06-27 Python bindings for GObject
python27-pygrib 2.0.1 2.ceda.el6 2016-09-18 Python module for reading/writing GRIB files
python27-pygtk2 2.16.0 1.ceda.el6 2014-06-27 Python bindings for GTK+
python27-pygtk2-libglade 2.16.0 1.ceda.el6 2014-06-27 A wrapper for the libglade library for use with PyGTK
python27-pyhdf 0.8_1 2.ceda.el6 2013-03-06 Python interface to the NCSA HDF4 library
python27-pyke 1.1.1 1.ceda.el6 2012-12-18 Python Knowledge Engine and Automatic Python Program Generator
python27-pyparsing 2.0.3 1.ceda.el6 2015-08-23 Python parsing module
python27-pyproj 1.ceda.el6 2017-07-05 Python interface to PROJ.4 library
python27-pyshp 1.2.10 1.ceda.el6 2016-10-20 Pure Python read/write support for ESRI Shapefile format
python27-pyside 1.2.1 1.ceda.el6 2013-10-22 Python bindings for 0MQ.
python27-pyspharm 1.0.8 1.ceda.el6 2014-09-09 Python Spherical Harmonic Transform Module
python27-pystan 1.ceda.el6 2018-03-30 Python interface to Stan, a package for Bayesian inference
python27-pytz 2016.10 1.ceda.el6 2016-12-11 World timezone definitions, modern and historical
python27-pyugrid 0.3.1 1.ceda.el6 2018-07-18 A package for working with triangular unstructured grids, and the data on them
python27-PyYAML 3.12 1.ceda.el6 2016-12-12 YAML parser and emitter for Python
python27-pyzmq 3.ceda.el6 2013-01-21 Python bindings for 0MQ.
python27-requests 2.18.1 1.ceda.el6 2017-07-04 Python HTTP for Humans.
python27-rpy2 2.3.9 1.ceda.el6 2014-02-21 Rpy2 is a Python interface to the R language.
python27-s3transfer 0.1.13 1.ceda.el6 2018-03-31 An Amazon S3 Transfer Manager
python27-ScientificPython 2.9.4 2.ceda.el6 2016-04-08 Various Python modules for scientific computing
python27-scikit-image 0.13.0 1.ceda.el6 2017-07-04 Image processing routines for SciPy
python27-scikit-learn 0.19.1 1.ceda.el6 2018-03-31 A set of python modules for machine learning and data mining
python27-scipy 0.19.1 1.ceda.el6 2017-07-05 SciPy: Scientific Library for Python
python27-scitools-iris 2.1.0 2.ceda.el6 2018-07-18 A powerful, easy to use, and community-driven Python library for analysing and visualising meteorological and oceanographic data sets
python27-seaborn 0.7.1 1.ceda.el6 2017-07-05 Seaborn: statistical data visualization
python27-setuptools 39.0.1 1.ceda.el6 2018-04-02 Easily download, build, install, upgrade, and uninstall Python packages
python27-Shapely 1.5.17 1.ceda.el6 2016-10-20 Geometric objects, predicates, and operations
python27-singledispatch 1.ceda.el6 2017-07-06 This library brings functools.singledispatch from Python 3.4 to Python 2.6-3.3.
python27-six 1.11.0 1.ceda.el6 2018-03-31 Python 2 and 3 compatibility utilities
python27-Sphinx 1.7.6 1.ceda.el6 2018-07-18 Python documentation generator
python27-statsmodels 0.8.0 1.ceda.el6 2018-03-30 Statistical computations and models for Python
python27-sympy 1.2 1.ceda.el6 2018-07-16 Computer algebra system (CAS) in Python
python27-Theano 1.0.1 1.ceda.el6 2018-04-02 Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs.
python27-toolz 0.9.0 1.ceda.el6 2018-04-02 List processing tools and functional utilities
python27-tornado 3.2 1.ceda.el6 2014-04-28 Tornado is an open source version of the scalable, non-blocking web server and and tools that power FriendFeed
python27-tqdm 4.19.9 1.ceda.el6 2018-04-02 Fast, Extensible Progress Meter
python27-urllib3 1.21.1 1.ceda.el6 2017-07-04 HTTP library with thread-safe connection pooling, file post, and more.
python27-virtualenv 15.0.3 3.ceda.el6 2016-09-18 Virtual Python Environment builder
python27-WebOb 1.7.3 1.ceda.el6 2017-07-06 WSGI request and response object
python27-windspharm 1.3.1 1.ceda.el6 2014-09-09 vector wind analysis in spherical coordinates
python27-wxPython 1.ceda.el6 2015-08-24 Cross platform GUI toolkit for Python
python27-xarray 0.10.2 1.ceda.el6 2018-03-31 N-D labeled arrays and datasets in Python
qt-devel 4.6.2 28.el6_5 2014-02-12 Development files for the Qt toolkit
R 2.10.0 2.el6 2012-10-18 A language for data analysis and graphics
R-core 2.10.0 2.el6 2012-10-18 The minimal R components necessary for a functional runtime
R-devel 2.10.0 2.el6 2012-10-18 Files for development of R packages
R-ncdf4 1.16 1.ceda.el6 2018-07-16 netCDF access library for R
redhat-lsb 4.0 7.el6 2012-12-05 LSB base libraries support for Red Hat Enterprise Linux
rjags 4.6 1.ceda.el6 2016-10-17 R interface to the JAGS library
sqlite-devel 3.6.20 1.el6_7.2 2015-07-29 Development tools for the sqlite3 embeddable SQL database engine
subversion 1.8.17 1 2016-12-01 A Modern Concurrent Versioning system.
subversion-devel 1.8.17 1 2016-12-01 Development package for Subversion developers.
subversion-tools 1.8.17 1 2016-12-01 Tools for Subversion
tcl 8.5.7 6.el6 2010-06-09 Tool Command Language, pronounced tickle
tcl-devel 8.5.7 6.el6 2010-06-09 Tcl scripting language development environment
tcsh 6.17 38.el6 2016-11-24 An enhanced version of csh, the C shell
thea 0.1 1.ceda 2013-10-22 A lightweight visulisation GUI for use with Iris and Cartopy
tk 8.5.7 5.el6 2010-06-25 The graphical toolkit for the Tcl scripting language
tk-devel 8.5.7 5.el6 2010-06-25 Tk graphical toolkit development files
tkdiff 4.2 1.ceda.el6 2012-11-14 a Tcl/Tk front-end to diff
tmux 1.6 3.el6 2013-08-10 A terminal multiplexer
tree 1.5.3 3.el6 2015-01-06 File system tree viewer
udunits 2.1.24 3.ceda.el6 2016-04-07 UDUNITS provides support for units of physical quantities.
udunits-devel 2.1.24 3.ceda.el6 2016-04-07 Development libraries for udunits
umutil 20130102 3.ceda.el6 2017-10-05 Various utilities related to the Unified Model
umutil-lib 20130102 3.ceda.el6 2017-10-05 Development libraries for compiling UM utilities
uuid 1.6.1 10.el6 2010-02-01 Universally Unique Identifier library
uuid-devel 1.6.1 10.el6 2010-02-01 Development support for Universally Unique Identifier library
valgrind 3.8.1 9.el6 2016-09-15 Tool for finding memory management bugs in programs
vim-enhanced 7.4.629 5.el6_8.1 2016-12-12 A version of the VIM editor which includes recent enhancements
wxGTK-devel 2.8.12 1.el6 2011-04-14 Development files for the wxGTK2 library
xconv 1.93 1.ceda.el6 2015-11-09 a tool for viewing and converting climate data in various formats
xemacs 21.5.31 5.el6 2012-03-17 Different version of Emacs
xorg-x11-util-macros 1.19.0 3.el6 2015-11-03 X.Org X11 Autotools macros
xpdf 3.04 6.el6 2014-12-02 A PDF file viewer for the X Window System